How to raise children with one Atheist and one Christian parent?

I am Atheist and the man I plan to marry and have children with is Christian (Baptist). I am worried about how we will teach our children about our beliefs because his beliefs undermine my beliefs and my beliefs undermine his. Obviously he wants his children to go to church and he'd like us to go to church as a family. How do we explain both of our beliefs without confusing our children?